Solyc03g063780.1.1

Description : 60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana (sp|q95747|rm16_arath : 100.0)

Gene families : OG0003080 (Archaeplastida) Phylogenetic Tree(s): OG0003080_tree ,
OG_05_0002809 (LandPlants) Phylogenetic Tree(s): OG_05_0002809_tree ,
OG_06_0031589 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g063780.1.1
Cluster	HCCA: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
ATMG00160	COX2	cytochrome oxidase 2	0.03	Archaeplastida
ATMG01280	ORF291	Cytochrome C oxidase subunit II-like, transmembrane domain	0.03	Archaeplastida
Cre03.g154350	No alias	Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01006909001	No alias	Cytochrome c oxidase subunit 2 OS=Glycine max	0.03	Archaeplastida
Gb_34804	No alias	Cytochrome c oxidase subunit 2 OS=Glycine max...	0.03	Archaeplastida
Mp4g18480.1	No alias	Cytochrome c oxidase subunit 2 OS=Marchantia polymorpha...	0.03	Archaeplastida
Solyc00g500101.1.1	No alias	Cytochrome c oxidase subunit 2 OS=Beta vulgaris...	0.07	Archaeplastida
Solyc00g500118.1.1	No alias	Cytochrome c oxidase subunit 2 OS=Beta vulgaris...	0.07	Archaeplastida
Solyc00g500244.1.1	No alias	Cytochrome c oxidase subunit 2 OS=Beta vulgaris...	0.07	Archaeplastida
Solyc00g500275.1.1	No alias	Cytochrome c oxidase subunit 2 OS=Beta vulgaris...	0.07	Archaeplastida
Solyc00g500359.1.1	No alias	Cytochrome c oxidase subunit 2 OS=Beta vulgaris...	0.07	Archaeplastida
Solyc09g015880.4.1	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022900	electron transport chain	IEA	Interproscan
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0055114	oxidation-reduction process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009767	photosynthetic electron transport chain	IEP	Neighborhood
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	Neighborhood
BP	GO:0019684	photosynthesis, light reaction	IEP	Neighborhood
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR016180	Ribosomal_L10e/L16	1	50
IPR011759	Cyt_c_oxidase_su2_TM_dom	49	82

External Links

No external refs found!

Solyc03g063780.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation