Solyc03g080010.3.1


Description : no hits & (original description: none)


Gene families : OG0002173 (Archaeplastida) Phylogenetic Tree(s): OG0002173_tree ,
OG_05_0008521 (LandPlants) Phylogenetic Tree(s): OG_05_0008521_tree ,
OG_06_0009565 (SeedPlants) Phylogenetic Tree(s): OG_06_0009565_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g080010.3.1
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00265580 evm_27.TU.AmTr_v1... DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.07 Archaeplastida
AMTR_s00018p00168540 evm_27.TU.AmTr_v1... DNA mismatch repair protein MSH1, mitochondrial... 0.06 Archaeplastida
GSVIVT01038675001 No alias DNA mismatch repair protein MSH1, mitochondrial... 0.03 Archaeplastida
Gb_24817 No alias DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os04g58410.1 No alias DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os10g36530.1 No alias DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_263724g0010 No alias DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Mp2g11550.1 No alias DNA mismatch repair protein MSH1, mitochondrial... 0.03 Archaeplastida
Pp3c17_13780V3.1 No alias DNA mismatch repair protein MutS, type 2 0.05 Archaeplastida
Pp3c5_20780V3.1 No alias DNA mismatch repair protein MutS, type 2 0.03 Archaeplastida
Smo141299 No alias DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo421325 No alias No description available 0.02 Archaeplastida
Zm00001e006512_P001 No alias DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Zm00001e012571_P001 No alias DNA mismatch repair protein MSH1, mitochondrial... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0098656 anion transmembrane transport IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1903825 organic acid transmembrane transport IEP Neighborhood
BP GO:1905039 carboxylic acid transmembrane transport IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!