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  5. Solyc03g083360.3.1

Solyc03g083360.3.1


Description : pectin methylesterase


Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g083360.3.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00238240 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
AMTR_s00010p00161740 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00021p00242180 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00129p00074780 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AT1G53840 PME1, ATPME1 pectin methylesterase 1 0.03 Archaeplastida
AT2G43050 ATPMEPCRD Plant invertase/pectin methylesterase inhibitor superfamily 0.06 Archaeplastida
AT3G10710 RHS12 root hair specific 12 0.04 Archaeplastida
AT3G14310 ATPME3, PME3 pectin methylesterase 3 0.08 Archaeplastida
AT3G47400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT3G59010 PME61 pectin methylesterase 61 0.04 Archaeplastida
AT5G04960 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT5G53370 ATPMEPCRF, PMEPCRF pectin methylesterase PCR fragment F 0.04 Archaeplastida
GSVIVT01027653001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01031164001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01038546001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_28387 No alias pectin methylesterase 0.03 Archaeplastida
Gb_36012 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g15039.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g21034.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os02g54190.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os06g09340.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os08g34900.1 No alias pectin methylesterase 0.04 Archaeplastida
MA_10436266g0010 No alias Pectinesterase 3 OS=Citrus sinensis... 0.04 Archaeplastida
MA_197926g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c18_22120V3.1 No alias pectin methylesterase PCR fragment F 0.02 Archaeplastida
Smo266995 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Solyc03g123620.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e011069_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e019069_P001 No alias pectin methylesterase 0.05 Archaeplastida
Zm00001e025576_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e026790_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e035838_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 269 566
IPR006501 Pectinesterase_inhib_dom 67 215
No external refs found!