Solyc03g093680.4.1


Description : component Magoh of RNA quality control Exon Junction complex


Gene families : OG0004894 (Archaeplastida) Phylogenetic Tree(s): OG0004894_tree ,
OG_05_0005301 (LandPlants) Phylogenetic Tree(s): OG_05_0005301_tree ,
OG_06_0007954 (SeedPlants) Phylogenetic Tree(s): OG_06_0007954_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g093680.4.1
Cluster HCCA: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00121p00130180 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
Cpa|evm.model.tig00000944.21 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
Cre09.g392692 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
LOC_Os08g01660.1 No alias component Magoh of RNA quality control Exon Junction complex 0.04 Archaeplastida
LOC_Os12g18880.1 No alias component Magoh of RNA quality control Exon Junction complex 0.07 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0008380 RNA splicing IEA Interproscan
CC GO:0035145 exon-exon junction complex IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004023 Mago_nashi 10 151
No external refs found!