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  5. AMTR_s00024p00085480

AMTR_s00024p00085480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.40

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.zf-HD transcription factor


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0000088 (SeedPlants) Phylogenetic Tree(s): OG_06_0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00085480
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00261620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00038p00027320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
AMTR_s00070p00154800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
AT5G65410 ZHD1, ZFHD2, HB25, ATHB25 homeobox protein 25 0.03 Archaeplastida
LOC_Os03g50920.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
LOC_Os08g37400.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
LOC_Os09g24820.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
LOC_Os11g13930.1 No alias transcription factor (zf-HD) 0.06 Archaeplastida
MA_10427932g0010 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Mp8g08190.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Pp3c19_20410V3.1 No alias homeobox protein 21 0.02 Archaeplastida
Pp3c1_15290V3.1 No alias homeobox protein 33 0.03 Archaeplastida
Pp3c22_9600V3.1 No alias homeobox protein 31 0.02 Archaeplastida
Smo38995 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Smo59934 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Smo59936 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
Solyc01g102980.3.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Solyc02g085160.1.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Solyc04g080490.4.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e004112_P001 No alias No annotation 0.02 Archaeplastida
Zm00001e008082_P001 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e009830_P001 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Zm00001e015590_P001 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Zm00001e018364_P001 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Zm00001e021292_P003 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Zm00001e022486_P001 No alias transcription factor (zf-HD) 0.06 Archaeplastida
Zm00001e023331_P001 No alias transcription factor (zf-HD) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 29 83
No external refs found!