AMTR_s00024p00094630 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.48

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP IV transcription factor

Gene families : OG0000182 (Archaeplastida) Phylogenetic Tree(s): OG0000182_tree ,
OG_05_0000064 (LandPlants) Phylogenetic Tree(s): OG_05_0000064_tree ,
OG_06_0004621 (SeedPlants) Phylogenetic Tree(s): OG_06_0004621_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00024p00094630
Cluster	HCCA: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
AT3G61150	HDG1, HD-GL2-1	homeodomain GLABROUS 1	0.03	Archaeplastida
AT4G04890	PDF2	protodermal factor 2	0.04	Archaeplastida
AT4G21750	ATML1	Homeobox-leucine zipper family protein / lipid-binding...	0.04	Archaeplastida
AT5G07260	No alias	START (StAR-related lipid-transfer) lipid-binding domain	0.03	Archaeplastida
GSVIVT01012643001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01029396001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
GSVIVT01030605001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
LOC_Os08g08820.2	No alias	transcription factor (HD-ZIP IV)	0.04	Archaeplastida
MA_10318273g0010	No alias	transcription factor (HD-ZIP IV)	0.02	Archaeplastida
MA_10374232g0010	No alias	transcription factor (HD-ZIP IV)	0.02	Archaeplastida
MA_10426189g0030	No alias	transcription factor (HD-ZIP IV)	0.02	Archaeplastida
MA_10433688g0010	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
MA_1086446g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_122121g0010	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
MA_17048g0010	No alias	transcription factor (HD-ZIP IV)	0.02	Archaeplastida
MA_93471g0010	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
Smo403927	No alias	No description available	0.03	Archaeplastida
Solyc02g080260.4.1	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
Solyc03g120620.3.1	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
Solyc06g072310.3.1	No alias	transcription factor (HD-ZIP IV)	0.07	Archaeplastida
Solyc10g005330.3.1	No alias	transcription factor (HD-ZIP IV)	0.05	Archaeplastida
Solyc10g006420.4.1	No alias	transcription factor (HD-ZIP IV)	0.04	Archaeplastida
Zm00001e002453_P001	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
Zm00001e017088_P001	No alias	transcription factor (HD-ZIP IV)	0.04	Archaeplastida
Zm00001e021649_P002	No alias	transcription factor (HD-ZIP IV)	0.04	Archaeplastida
Zm00001e023786_P003	No alias	transcription factor (HD-ZIP IV)	0.04	Archaeplastida
Zm00001e036212_P002	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
Zm00001e039947_P001	No alias	transcription factor (HD-ZIP IV)	0.05	Archaeplastida
Zm00001e040312_P001	No alias	transcription factor (HD-ZIP IV)	0.04	Archaeplastida
Zm00001e042218_P002	No alias	transcription factor (HD-ZIP IV)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006275	regulation of DNA replication	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
MF	GO:0030337	DNA polymerase processivity factor activity	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
CC	GO:0043626	PCNA complex	IEP	Neighborhood
CC	GO:0044796	DNA polymerase processivity factor complex	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051052	regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0071804	cellular potassium ion transport	IEP	Neighborhood
BP	GO:0071805	potassium ion transmembrane transport	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002913	START_lipid-bd_dom	215	437
IPR001356	Homeobox_dom	18	73

External Links

No external refs found!

AMTR_s00024p00094630 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation