1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g096350.3.1

Solyc03g096350.3.1


Description : transcription factor (MYB-related)


Gene families : OG0000067 (Archaeplastida) Phylogenetic Tree(s): OG0000067_tree ,
OG_05_0000498 (LandPlants) Phylogenetic Tree(s): OG_05_0000498_tree ,
OG_06_0000376 (SeedPlants) Phylogenetic Tree(s): OG_06_0000376_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g096350.3.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00021500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00029p00022290 evm_27.TU.AmTr_v1... Transcription factor SRM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00106p00065610 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AT1G19000 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
AT3G11280 No alias Duplicated homeodomain-like superfamily protein 0.05 Archaeplastida
AT4G36570 ATRL3, RL3 RAD-like 3 0.03 Archaeplastida
AT5G01200 No alias Duplicated homeodomain-like superfamily protein 0.03 Archaeplastida
AT5G05790 No alias Duplicated homeodomain-like superfamily protein 0.04 Archaeplastida
AT5G56840 No alias myb-like transcription factor family protein 0.03 Archaeplastida
GSVIVT01005816001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01016996001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.06 Archaeplastida
GSVIVT01028262001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01036090001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
Gb_05002 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Gb_28483 No alias transcription factor (MYB-related) 0.05 Archaeplastida
LOC_Os01g09280.1 No alias transcription factor (MYB-related) 0.02 Archaeplastida
LOC_Os01g09640.1 No alias transcription factor (MYB-related) 0.04 Archaeplastida
LOC_Os01g64360.1 No alias transcription factor (MYB-related) 0.04 Archaeplastida
LOC_Os02g47744.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
LOC_Os04g27410.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
LOC_Os05g50340.1 No alias transcription factor (MYB-related) 0.04 Archaeplastida
LOC_Os08g04840.1 No alias transcription factor (MYB-related) 0.02 Archaeplastida
LOC_Os10g41200.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
MA_16729g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
MA_41803g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
MA_957399g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Pp3c4_17230V3.1 No alias Duplicated homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c9_19080V3.1 No alias myb-like transcription factor family protein 0.02 Archaeplastida
Solyc03g119740.3.1 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Solyc09g014250.3.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e002313_P001 No alias transcription factor (MYB-related) 0.07 Archaeplastida
Zm00001e019254_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e025784_P001 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Zm00001e031755_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e032519_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e032520_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e037865_P001 No alias transcription factor (MYB-related) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 20 67
IPR001005 SANT/Myb 120 164
No external refs found!