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  5. Solyc03g096830.4.1

Solyc03g096830.4.1


Description : Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana (sp|q5g1s8|pp241_arath : 1768.0)


Gene families : OG0006433 (Archaeplastida) Phylogenetic Tree(s): OG0006433_tree ,
OG_05_0005096 (LandPlants) Phylogenetic Tree(s): OG_05_0005096_tree ,
OG_06_0005733 (SeedPlants) Phylogenetic Tree(s): OG_06_0005733_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g096830.4.1
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00265800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g18110,... 0.03 Archaeplastida
AT3G18110 EMB1270 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01024457001 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.04 Archaeplastida
Gb_33699 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.08 Archaeplastida
LOC_Os06g09880.1 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.03 Archaeplastida
MA_712594g0010 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.12 Archaeplastida
MA_8988374g0010 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.05 Archaeplastida
Pp3c25_7340V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Pp3c6_11500V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Zm00001e036242_P002 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0009165 nucleotide biosynthetic process IEP Neighborhood
MF GO:0016778 diphosphotransferase activity IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 946 1003
IPR002885 Pentatricopeptide_repeat 319 378
IPR002885 Pentatricopeptide_repeat 403 433
IPR002885 Pentatricopeptide_repeat 1066 1094
IPR002885 Pentatricopeptide_repeat 1030 1058
IPR002885 Pentatricopeptide_repeat 1136 1164
IPR002885 Pentatricopeptide_repeat 715 743
IPR002885 Pentatricopeptide_repeat 1102 1129
IPR002885 Pentatricopeptide_repeat 508 550
IPR002885 Pentatricopeptide_repeat 435 483
IPR002885 Pentatricopeptide_repeat 820 863
IPR002885 Pentatricopeptide_repeat 260 304
No external refs found!