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  5. Solyc03g096870.3.1

Solyc03g096870.3.1


Description : CDC20-type (APC/C)-dependent ubiquitination activator protein


Gene families : OG0000394 (Archaeplastida) Phylogenetic Tree(s): OG0000394_tree ,
OG_05_0000640 (LandPlants) Phylogenetic Tree(s): OG_05_0000640_tree ,
OG_06_0001025 (SeedPlants) Phylogenetic Tree(s): OG_06_0001025_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g096870.3.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00242760 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.09 Archaeplastida
AT4G33260 CDC20.2 Transducin family protein / WD-40 repeat family protein 0.05 Archaeplastida
AT4G33270 CDC20.1 Transducin family protein / WD-40 repeat family protein 0.05 Archaeplastida
LOC_Os01g74146.1 No alias CDH1-type (APC/C)-dependent ubiquitination activator protein 0.06 Archaeplastida
LOC_Os04g51110.1 No alias CDC20-type (APC/C)-dependent ubiquitination activator protein 0.08 Archaeplastida
MA_10290598g0010 No alias CDH1-type (APC/C)-dependent ubiquitination activator protein 0.05 Archaeplastida
Pp3c21_3140V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.02 Archaeplastida
Zm00001e018501_P001 No alias CDH1-type (APC/C)-dependent ubiquitination activator protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 173 231
IPR001680 WD40_repeat 256 290
IPR001680 WD40_repeat 391 426
IPR001680 WD40_repeat 303 341
No external refs found!