1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g098280.4.1

Solyc03g098280.4.1


Description : RIS-Complex miRNA recruiting factor (AGO1)


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0000677 (LandPlants) Phylogenetic Tree(s): OG_05_0000677_tree ,
OG_06_0000508 (SeedPlants) Phylogenetic Tree(s): OG_06_0000508_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g098280.4.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.06 Archaeplastida
AMTR_s00008p00203230 evm_27.TU.AmTr_v1... Protein argonaute 16 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
AMTR_s00058p00069070 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.06 Archaeplastida
AT2G27040 AGO4, OCP11 Argonaute family protein 0.04 Archaeplastida
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.04 Archaeplastida
GSVIVT01018054001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01029383001 No alias Chromatin organisation.DNA methylation.canonical... 0.05 Archaeplastida
GSVIVT01037488001 No alias Chromatin organisation.DNA methylation.canonical... 0.06 Archaeplastida
Gb_34718 No alias Protein argonaute 10 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os02g58490.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.09 Archaeplastida
LOC_Os04g06770.2 No alias siRNA-integrating factor (AGO) 0.06 Archaeplastida
LOC_Os04g47870.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.05 Archaeplastida
LOC_Os06g39640.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.07 Archaeplastida
MA_118377g0010 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.05 Archaeplastida
MA_14457g0010 No alias Protein argonaute 4A OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_14457g0020 No alias Protein argonaute 4B OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_158278g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_18547g0010 No alias Protein argonaute 1A OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Mp1g18110.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.05 Archaeplastida
Pp3c1_35770V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Archaeplastida
Smo446086 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
Solyc02g069260.3.1 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.02 Archaeplastida
Zm00001e025496_P001 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
Zm00001e029696_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.05 Archaeplastida
Zm00001e037347_P002 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR003100 PAZ_dom 320 445
IPR003165 Piwi 607 926
IPR032472 ArgoL2 456 502
IPR024357 Argonaut_Gly-rich 17 100
IPR032474 Argonaute_N 120 254
IPR014811 ArgoL1 264 313
IPR032473 Argonaute_Mid_dom 513 587
No external refs found!