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  5. Solyc03g111650.4.1

Solyc03g111650.4.1


Description : Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana (sp|q9fgr7|pp426_arath : 541.0)


Gene families : OG0007991 (Archaeplastida) Phylogenetic Tree(s): OG0007991_tree ,
OG_05_0007095 (LandPlants) Phylogenetic Tree(s): OG_05_0007095_tree ,
OG_06_0009597 (SeedPlants) Phylogenetic Tree(s): OG_06_0009597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g111650.4.1
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00163880 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50280,... 0.03 Archaeplastida
AT5G50280 EMB1006 Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
GSVIVT01007576001 No alias Pentatricopeptide repeat-containing protein At5g50280,... 0.03 Archaeplastida
Gb_28383 No alias Pentatricopeptide repeat-containing protein At5g50280,... 0.05 Archaeplastida
MA_135491g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp2g11150.1 No alias Pentatricopeptide repeat-containing protein At5g50280,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006788 heme oxidation IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 335 361
IPR002885 Pentatricopeptide_repeat 364 411
IPR002885 Pentatricopeptide_repeat 258 302
IPR002885 Pentatricopeptide_repeat 471 517
IPR002885 Pentatricopeptide_repeat 527 578
No external refs found!