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  5. Solyc03g111740.3.1

Solyc03g111740.3.1


Description : Autophagy-related protein 16 OS=Arabidopsis thaliana (sp|q6nnp0|atg16_arath : 575.0)


Gene families : OG0005952 (Archaeplastida) Phylogenetic Tree(s): OG0005952_tree ,
OG_05_0006407 (LandPlants) Phylogenetic Tree(s): OG_05_0006407_tree ,
OG_06_0008514 (SeedPlants) Phylogenetic Tree(s): OG_06_0008514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g111740.3.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Zm00001e005657_P002 No alias Autophagy-related protein 16 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 94 129
IPR001680 WD40_repeat 177 214
IPR001680 WD40_repeat 220 255
IPR001680 WD40_repeat 348 385
IPR001680 WD40_repeat 322 343
IPR001680 WD40_repeat 260 291
No external refs found!