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  5. Solyc03g111780.1.1

Solyc03g111780.1.1


Description : Protein JINGUBANG OS=Arabidopsis thaliana (sp|o48716|jgb_arath : 221.0)


Gene families : OG0000380 (Archaeplastida) Phylogenetic Tree(s): OG0000380_tree ,
OG_05_0000225 (LandPlants) Phylogenetic Tree(s): OG_05_0000225_tree ,
OG_06_0000140 (SeedPlants) Phylogenetic Tree(s): OG_06_0000140_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g111780.1.1
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00123610 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00053p00162370 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00109p00134110 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00109p00135240 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00156p00066850 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G24130 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Archaeplastida
AT1G49450 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Archaeplastida
AT3G18950 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
AT5G50120 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Archaeplastida
GSVIVT01007825001 No alias No description available 0.04 Archaeplastida
GSVIVT01009612001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01031882001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01035639001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_19215 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_26403 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_26404 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_27340 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os03g52870.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10429909g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_10431396g0020 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_107471g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_28858g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_634003g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c11_2770V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Pp3c1_1790V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Pp3c4_25840V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Smo66275 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc01g109120.3.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc04g005020.3.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc07g025140.4.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e007790_P001 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004097 catechol oxidase activity IEP Neighborhood
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Neighborhood
MF GO:0004312 fatty acid synthase activity IEP Neighborhood
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0030259 lipid glycosylation IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 345 393
IPR001680 WD40_repeat 207 242
IPR001680 WD40_repeat 302 331
IPR001680 WD40_repeat 252 286
No external refs found!