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  5. Solyc03g113040.4.1

Solyc03g113040.4.1


Description : subfamily ABCA transporter


Gene families : OG0000865 (Archaeplastida) Phylogenetic Tree(s): OG0000865_tree ,
OG_05_0001209 (LandPlants) Phylogenetic Tree(s): OG_05_0001209_tree ,
OG_06_0000923 (SeedPlants) Phylogenetic Tree(s): OG_06_0000923_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g113040.4.1
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00139590 evm_27.TU.AmTr_v1... ABC transporter A family member 12 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT3G47740 ATATH2, ATH2, ABCA3 ABC2 homolog 2 0.06 Archaeplastida
AT3G47750 ABCA4, ATATH3 ATP binding cassette subfamily A4 0.04 Archaeplastida
AT3G47770 ATH5, ATATH5, ABCA6 ABC2 homolog 5 0.06 Archaeplastida
AT3G47780 ATATH6, ATH6 ABC2 homolog 6 0.02 Archaeplastida
AT3G47790 ATH7, ATATH7 ABC2 homolog 7 0.05 Archaeplastida
AT5G61700 ATH16, ATATH16 ABC2 homolog 16 0.03 Archaeplastida
Cpa|evm.model.tig00000057.67 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
Cre14.g618400 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
Cre17.g721000 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
GSVIVT01008040001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
LOC_Os08g30770.1 No alias subfamily ABCA transporter 0.02 Archaeplastida
LOC_Os08g30780.1 No alias subfamily ABCA transporter 0.03 Archaeplastida
Pp3c12_20160V3.1 No alias ABC2 homolog 7 0.04 Archaeplastida
Smo171117 No alias Solute transport.primary active transport.ABC... 0.05 Archaeplastida
Smo268954 No alias Solute transport.primary active transport.ABC... 0.04 Archaeplastida
Solyc06g070920.3.1 No alias subfamily ABCA transporter 0.04 Archaeplastida
Solyc06g070950.2.1 No alias subfamily ABCA transporter 0.05 Archaeplastida
Zm00001e014485_P003 No alias subfamily ABCA transporter 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 645 789
No external refs found!