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  5. Solyc03g114000.3.1

Solyc03g114000.3.1


Description : transcription factor (LIM)


Gene families : OG0000926 (Archaeplastida) Phylogenetic Tree(s): OG0000926_tree ,
OG_05_0000998 (LandPlants) Phylogenetic Tree(s): OG_05_0000998_tree ,
OG_06_0003820 (SeedPlants) Phylogenetic Tree(s): OG_06_0003820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g114000.3.1
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AT1G01780 No alias GATA type zinc finger transcription factor family protein 0.07 Archaeplastida
AT2G45800 No alias GATA type zinc finger transcription factor family protein 0.02 Archaeplastida
AT3G61230 No alias GATA type zinc finger transcription factor family protein 0.06 Archaeplastida
GSVIVT01026849001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.05 Archaeplastida
Gb_09450 No alias transcription factor (LIM) 0.05 Archaeplastida
Gb_11447 No alias transcription factor (LIM) 0.03 Archaeplastida
LOC_Os04g45010.1 No alias transcription factor (LIM) 0.02 Archaeplastida
LOC_Os10g35930.1 No alias transcription factor (LIM) 0.03 Archaeplastida
Solyc01g094320.3.1 No alias transcription factor (LIM) 0.06 Archaeplastida
Solyc08g007940.4.1 No alias transcription factor (LIM) 0.03 Archaeplastida
Solyc08g080740.3.1 No alias transcription factor (LIM) 0.04 Archaeplastida
Solyc10g017520.3.1 No alias transcription factor (LIM) 0.04 Archaeplastida
Zm00001e015234_P001 No alias transcription factor (LIM) 0.05 Archaeplastida
Zm00001e023098_P001 No alias transcription factor (LIM) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0008198 ferrous iron binding IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001781 Znf_LIM 11 65
IPR001781 Znf_LIM 109 164
No external refs found!