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  5. Solyc03g114010.3.1

Solyc03g114010.3.1


Description : Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana (sp|o82380|pp175_arath : 348.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g114010.3.1
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00167980 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33990... 0.08 Archaeplastida
AT3G20730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01009974001 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
GSVIVT01017989001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
LOC_Os01g66160.1 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.08 Archaeplastida
Smo118230 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Smo126194 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
Zm00001e033335_P001 No alias Pentatricopeptide repeat-containing protein At5g61800... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 212 239
IPR002885 Pentatricopeptide_repeat 108 133
IPR002885 Pentatricopeptide_repeat 420 444
IPR002885 Pentatricopeptide_repeat 243 269
IPR002885 Pentatricopeptide_repeat 319 341
IPR002885 Pentatricopeptide_repeat 344 392
No external refs found!