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  5. AMTR_s00024p00155680

AMTR_s00024p00155680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.111

Description : Solute transport.channels.VIC superfamily.cyclic nucleotide-gated cation channel (CNGC-type)


Gene families : OG0000137 (Archaeplastida) Phylogenetic Tree(s): OG0000137_tree ,
OG_05_0002629 (LandPlants) Phylogenetic Tree(s): OG_05_0002629_tree ,
OG_06_0001915 (SeedPlants) Phylogenetic Tree(s): OG_06_0001915_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00155680
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01015970001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.03 Archaeplastida
GSVIVT01029404001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.02 Archaeplastida
GSVIVT01029407001 No alias Solute transport.channels.VIC superfamily.cyclic... 0.03 Archaeplastida
Gb_10882 No alias Probable cyclic nucleotide-gated ion channel 20,... 0.03 Archaeplastida
LOC_Os02g15580.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida
MA_10425858g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc06g051920.4.1 No alias cyclic nucleotide-gated cation channel (CNGC) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0008219 cell death IEP Neighborhood
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 240 510
No external refs found!