Description : no hits & (original description: none)
Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree ,
OG_05_0003742 (LandPlants) Phylogenetic Tree(s): OG_05_0003742_tree ,
OG_06_0004412 (SeedPlants) Phylogenetic Tree(s): OG_06_0004412_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc03g114370.4.1 | |
Cluster | HCCA: Cluster_209 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00002p00225030 | evm_27.TU.AmTr_v1... | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.09 | Archaeplastida | |
AMTR_s00062p00159540 | evm_27.TU.AmTr_v1... | DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana | 0.09 | Archaeplastida | |
AT2G40700 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.2 | Archaeplastida | |
AT3G18600 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.19 | Archaeplastida | |
AT5G05450 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.04 | Archaeplastida | |
AT5G54910 | No alias | DEA(D/H)-box RNA helicase family protein | 0.04 | Archaeplastida | |
AT5G65900 | No alias | DEA(D/H)-box RNA helicase family protein | 0.02 | Archaeplastida | |
Cpa|evm.model.tig00000441.11 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.01 | Archaeplastida | |
Cpa|evm.model.tig00000615.43 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
Cpa|evm.model.tig00020684.38 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... | 0.05 | Archaeplastida | |
Cre03.g156150 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana | 0.25 | Archaeplastida | |
Cre03.g188550 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... | 0.15 | Archaeplastida | |
Cre06.g282600 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana | 0.07 | Archaeplastida | |
Cre07.g314900 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.31 | Archaeplastida | |
GSVIVT01008218001 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.16 | Archaeplastida | |
GSVIVT01015034001 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana | 0.04 | Archaeplastida | |
GSVIVT01032750001 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana | 0.08 | Archaeplastida | |
GSVIVT01037636001 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana | 0.15 | Archaeplastida | |
Gb_12810 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... | 0.06 | Archaeplastida | |
Gb_16157 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... | 0.05 | Archaeplastida | |
LOC_Os01g07080.1 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... | 0.17 | Archaeplastida | |
LOC_Os03g58810.1 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.21 | Archaeplastida | |
LOC_Os05g01990.1 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... | 0.02 | Archaeplastida | |
LOC_Os07g33340.1 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... | 0.05 | Archaeplastida | |
MA_10334041g0020 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... | 0.04 | Archaeplastida | |
MA_109969g0010 | No alias | DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis... | 0.06 | Archaeplastida | |
MA_7914832g0010 | No alias | No annotation | 0.01 | Archaeplastida | |
Mp6g05260.1 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... | 0.22 | Archaeplastida | |
Mp7g12890.1 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.25 | Archaeplastida | |
Mp8g10290.1 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... | 0.12 | Archaeplastida | |
Pp3c11_510V3.1 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.02 | Archaeplastida | |
Pp3c17_13450V3.1 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.12 | Archaeplastida | |
Pp3c1_22540V3.1 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.13 | Archaeplastida | |
Pp3c4_14810V3.1 | No alias | DEA(D/H)-box RNA helicase family protein | 0.17 | Archaeplastida | |
Smo104808 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.07 | Archaeplastida | |
Smo230685 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.07 | Archaeplastida | |
Zm00001e010480_P001 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... | 0.16 | Archaeplastida | |
Zm00001e011842_P001 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.21 | Archaeplastida | |
Zm00001e016823_P002 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... | 0.14 | Archaeplastida | |
Zm00001e027024_P001 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... | 0.06 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
CC | GO:0005575 | cellular_component | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005685 | U1 snRNP | IEP | Neighborhood |
CC | GO:0005730 | nucleolus | IEP | Neighborhood |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
BP | GO:0006082 | organic acid metabolic process | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Neighborhood |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
MF | GO:0008134 | transcription factor binding | IEP | Neighborhood |
MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0009987 | cellular process | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
MF | GO:0016874 | ligase activity | IEP | Neighborhood |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
CC | GO:0030684 | preribosome | IEP | Neighborhood |
CC | GO:0032040 | small-subunit processome | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
CC | GO:0034457 | Mpp10 complex | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | Neighborhood |
BP | GO:0043038 | amino acid activation | IEP | Neighborhood |
BP | GO:0043039 | tRNA aminoacylation | IEP | Neighborhood |
BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0043436 | oxoacid metabolic process | IEP | Neighborhood |
BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
CC | GO:0044422 | organelle part | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
CC | GO:0044452 | nucleolar part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
No external refs found! |