Solyc03g114830.3.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0002159 (SeedPlants) Phylogenetic Tree(s): OG_06_0002159_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g114830.3.1
Cluster	HCCA: Cluster_52

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00198970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
GSVIVT01008560001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01018839001	No alias	Floral homeotic protein DEFICIENS OS=Antirrhinum majus	0.04	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
Gb_28587	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g06750.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g11970.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g22540.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_141872g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_78010g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_7858089g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Mp4g11760.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Pp3c16_19170V3.1	No alias	AGAMOUS-like 61	0.02	Archaeplastida
Pp3c17_24040V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Pp3c25_6940V3.1	No alias	AGAMOUS-like 62	0.02	Archaeplastida
Pp3c3_33360V3.1	No alias	AGAMOUS-like 44	0.02	Archaeplastida
Pp3c3_33370V3.1	No alias	AGAMOUS-like 65	0.02	Archaeplastida
Solyc02g065730.2.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc12g038510.2.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e005708_P002	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e012024_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e015447_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e023236_P005	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e036127_P002	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e036159_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e039774_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004470	malic enzyme activity	IEP	Neighborhood
MF	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity	IEP	Neighborhood
CC	GO:0005875	microtubule associated complex	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010038	response to metal ion	IEP	Neighborhood
MF	GO:0016615	malate dehydrogenase activity	IEP	Neighborhood
CC	GO:0030286	dynein complex	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	90	172
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Solyc03g114830.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation