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  5. Solyc03g115920.3.1

Solyc03g115920.3.1


Description : plant-specific E3 ubiquitin ligase (RSL/RFA)


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0000889 (LandPlants) Phylogenetic Tree(s): OG_05_0000889_tree ,
OG_06_0000875 (SeedPlants) Phylogenetic Tree(s): OG_06_0000875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g115920.3.1
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00103340 evm_27.TU.AmTr_v1... ATP-dependent RNA helicase DEAH12, chloroplastic... 0.04 Archaeplastida
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.03 Archaeplastida
GSVIVT01016055001 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.03 Archaeplastida
GSVIVT01026257001 No alias Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_29625 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida
MA_179230g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 Archaeplastida
Pp3c5_8660V3.1 No alias zinc finger (C3HC4-type RING finger) family protein 0.03 Archaeplastida
Smo415256 No alias No description available 0.03 Archaeplastida
Smo48392 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.04 Archaeplastida
Solyc03g117860.3.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 210 260
IPR002867 IBR_dom 147 193
No external refs found!