1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g116070.1.1

Solyc03g116070.1.1


Description : transcription factor (zf-HD)


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0000088 (SeedPlants) Phylogenetic Tree(s): OG_06_0000088_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g116070.1.1
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00261620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AMTR_s00038p00027320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00070p00154800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00099p00145100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00119p00074870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
AT1G69600 ATHB29, ZFHD1, ZHD11 zinc finger homeodomain 1 0.05 Archaeplastida
AT1G74660 MIF1 mini zinc finger 1 0.07 Archaeplastida
AT1G75240 AtHB33, ZHD5, HB33 homeobox protein 33 0.05 Archaeplastida
AT3G28920 HB34, ZHD9, AtHB34 homeobox protein 34 0.05 Archaeplastida
AT3G50890 ZHD7, HB28, AtHB28 homeobox protein 28 0.05 Archaeplastida
AT5G15210 ZHD8, ATHB30, ZFHD3, HB30 homeobox protein 30 0.05 Archaeplastida
AT5G65410 ZHD1, ZFHD2, HB25, ATHB25 homeobox protein 25 0.02 Archaeplastida
GSVIVT01000250001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01011413001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01011415001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01019981001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Gb_18045 No alias transcription factor (zf-HD) 0.04 Archaeplastida
LOC_Os02g47770.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
LOC_Os03g50920.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
LOC_Os08g37400.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
LOC_Os09g24810.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
LOC_Os09g24820.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
LOC_Os12g03110.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
LOC_Os12g10630.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_101972g0010 No alias transcription factor (zf-HD) 0.04 Archaeplastida
MA_453742g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_470326g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_91212g0010 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_97909g0010 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Pp3c19_20410V3.1 No alias homeobox protein 21 0.02 Archaeplastida
Pp3c21_11010V3.1 No alias homeobox protein 22 0.05 Archaeplastida
Pp3c2_21160V3.1 No alias homeobox protein 33 0.05 Archaeplastida
Pp3c7_15000V3.1 No alias homeobox protein 33 0.06 Archaeplastida
Smo111756 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
Smo38995 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
Smo59934 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Solyc02g085160.1.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Solyc04g074990.3.1 No alias transcription factor (zf-HD) 0.05 Archaeplastida
Solyc05g007580.1.1 No alias transcription factor (zf-HD) 0.04 Archaeplastida
Zm00001e009830_P001 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Zm00001e021292_P003 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Zm00001e034119_P001 No alias transcription factor (zf-HD) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 21 73
No external refs found!