1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00024p00178920

AMTR_s00024p00178920 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.137

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL21 component


Gene families : OG0001742 (Archaeplastida) Phylogenetic Tree(s): OG0001742_tree ,
OG_05_0002541 (LandPlants) Phylogenetic Tree(s): OG_05_0002541_tree ,
OG_06_0002619 (SeedPlants) Phylogenetic Tree(s): OG_06_0002619_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00178920
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT1G09590 No alias Translation protein SH3-like family protein 0.21 Archaeplastida
AT1G09690 No alias Translation protein SH3-like family protein 0.21 Archaeplastida
AT1G57660 No alias Translation protein SH3-like family protein 0.12 Archaeplastida
Cpa|evm.model.tig00000640.5 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Cre06.g278135 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 Archaeplastida
GSVIVT01001130001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
GSVIVT01033444001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
GSVIVT01033455001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
Gb_09077 No alias component RPL21 of LSU proteome component 0.09 Archaeplastida
LOC_Os03g04750.1 No alias component RPL21 of LSU proteome component 0.16 Archaeplastida
LOC_Os10g32820.1 No alias component RPL21 of LSU proteome component 0.09 Archaeplastida
MA_186351g0010 No alias component RPL21 of LSU proteome component 0.07 Archaeplastida
MA_40819g0010 No alias component RPL21 of LSU proteome component 0.02 Archaeplastida
Mp6g01390.1 No alias component RPL21 of LSU proteome component 0.22 Archaeplastida
Pp3c12_9320V3.1 No alias Translation protein SH3-like family protein 0.23 Archaeplastida
Pp3c13_2360V3.1 No alias Translation protein SH3-like family protein 0.17 Archaeplastida
Pp3c3_5550V3.1 No alias Translation protein SH3-like family protein 0.2 Archaeplastida
Pp3c4_21520V3.1 No alias Translation protein SH3-like family protein 0.21 Archaeplastida
Smo170832 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Solyc10g078960.2.1 No alias component RPL21 of LSU proteome component 0.18 Archaeplastida
Solyc10g080590.2.1 No alias component RPL21 of LSU proteome component 0.15 Archaeplastida
Zm00001e000341_P001 No alias component RPL21 of LSU proteome component 0.16 Archaeplastida
Zm00001e004623_P001 No alias component RPL21 of LSU proteome component 0.1 Archaeplastida
Zm00001e012727_P001 No alias component RPL21 of LSU proteome component 0.13 Archaeplastida
Zm00001e038963_P001 No alias component RPL21 of LSU proteome component 0.15 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001147 Ribosomal_L21e 4 99
No external refs found!