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  5. Solyc03g116840.3.1

Solyc03g116840.3.1


Description : RNA editing factor (OTP81)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000904 (SeedPlants) Phylogenetic Tree(s): OG_06_0000904_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g116840.3.1
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266930 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
AMTR_s00004p00087070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00010p00228270 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00016p00166520 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00067p00084570 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01010223001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_25869 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
Gb_33070 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Gb_38938 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
LOC_Os03g60690.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
LOC_Os04g38980.1 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.02 Archaeplastida
LOC_Os06g30940.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.04 Archaeplastida
LOC_Os08g04400.1 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
LOC_Os12g13110.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.05 Archaeplastida
MA_10432670g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_49629g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Pp3c16_5160V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Pp3c2_12230V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
Smo121365 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.04 Archaeplastida
Smo130420 No alias Pentatricopeptide repeat-containing protein At4g19191,... 0.02 Archaeplastida
Smo150748 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.01 Archaeplastida
Smo182822 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.05 Archaeplastida
Smo80412 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo84339 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Solyc02g084830.4.1 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.04 Archaeplastida
Solyc04g082870.1.1 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 Archaeplastida
Zm00001e039305_P001 No alias RNA editing factor (MEF13) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 873 892
IPR002885 Pentatricopeptide_repeat 901 928
IPR002885 Pentatricopeptide_repeat 1001 1029
IPR002885 Pentatricopeptide_repeat 1105 1130
IPR002885 Pentatricopeptide_repeat 973 999
IPR002885 Pentatricopeptide_repeat 1131 1177
IPR002885 Pentatricopeptide_repeat 797 844
IPR002885 Pentatricopeptide_repeat 1030 1077
IPR008906 HATC_C_dom 587 669
IPR002885 Pentatricopeptide_repeat 1195 1245
IPR032867 DYW_dom 1304 1427
IPR025525 hAT-like_transposase_RNase-H 432 529
IPR003656 Znf_BED 39 82
No external refs found!