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  5. Solyc03g117430.3.1

Solyc03g117430.3.1


Description : TAC17 cofactor of plastid-encoded RNA polymerase


Gene families : OG0000971 (Archaeplastida) Phylogenetic Tree(s): OG0000971_tree ,
OG_05_0003359 (LandPlants) Phylogenetic Tree(s): OG_05_0003359_tree ,
OG_06_0003442 (SeedPlants) Phylogenetic Tree(s): OG_06_0003442_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g117430.3.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 Archaeplastida
AT1G15730 No alias Cobalamin biosynthesis CobW-like protein 0.04 Archaeplastida
LOC_Os02g55630.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
Pp3c11_23140V3.1 No alias plastid transcriptionally active 17 0.02 Archaeplastida
Zm00001e016143_P001 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 98 282
IPR011629 Cbl_biosynth_CobW-like_C 364 458
No external refs found!