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    4. Sequence
    5. Solyc03g117930.4.1

    Solyc03g117930.4.1


    Description : Protein FRIGIDA OS=Arabidopsis thaliana (sp|p0dh90|frigi_arath : 244.0)


    Gene families : OG0003683 (Archaeplastida) Phylogenetic Tree(s): OG0003683_tree ,
    OG_05_0002554 (LandPlants) Phylogenetic Tree(s): OG_05_0002554_tree ,
    OG_06_0001450 (SeedPlants) Phylogenetic Tree(s): OG_06_0001450_tree

    Sequence : coding (download), protein (download)


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    Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


    Type Description Actions
    Neighborhood HRR: Solyc03g117930.4.1
    Cluster HCCA: Cluster_202

    Target Alias Description ECC score Gene Family Method Actions
    AMTR_s00016p00259070 evm_27.TU.AmTr_v1... Protein FRIGIDA OS=Arabidopsis thaliana 0.03 Archaeplastida
    AMTR_s00088p00169250 evm_27.TU.AmTr_v1... FRIGIDA-like protein 3 OS=Arabidopsis thaliana 0.04 Archaeplastida
    AMTR_s00088p00170220 evm_27.TU.AmTr_v1... FRIGIDA-like protein 3 OS=Arabidopsis thaliana 0.04 Archaeplastida
    GSVIVT01014065001 No alias Protein FRIGIDA OS=Arabidopsis thaliana 0.01 Archaeplastida
    MA_10435809g0020 No alias FRIGIDA-like protein 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida

    Type GO Term Name Evidence Source

    No GO annotation available for this sequence
    Toggle parental
    Type GO Term Name Evidence Source
    MF GO:0000166 nucleotide binding IEP Neighborhood
    BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
    BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
    BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
    MF GO:0001882 nucleoside binding IEP Neighborhood
    MF GO:0001883 purine nucleoside binding IEP Neighborhood
    MF GO:0003674 molecular_function IEP Neighborhood
    MF GO:0003676 nucleic acid binding IEP Neighborhood
    MF GO:0003723 RNA binding IEP Neighborhood
    MF GO:0003724 RNA helicase activity IEP Neighborhood
    MF GO:0003729 mRNA binding IEP Neighborhood
    MF GO:0005488 binding IEP Neighborhood
    MF GO:0005525 GTP binding IEP Neighborhood
    CC GO:0005643 nuclear pore IEP Neighborhood
    CC GO:0005681 spliceosomal complex IEP Neighborhood
    CC GO:0005685 U1 snRNP IEP Neighborhood
    BP GO:0006376 mRNA splice site selection IEP Neighborhood
    BP GO:0006396 RNA processing IEP Neighborhood
    BP GO:0006397 mRNA processing IEP Neighborhood
    BP GO:0006400 tRNA modification IEP Neighborhood
    MF GO:0008134 transcription factor binding IEP Neighborhood
    BP GO:0008380 RNA splicing IEP Neighborhood
    BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
    BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
    BP GO:0010629 negative regulation of gene expression IEP Neighborhood
    BP GO:0016070 RNA metabolic process IEP Neighborhood
    BP GO:0016071 mRNA metabolic process IEP Neighborhood
    BP GO:0016458 gene silencing IEP Neighborhood
    MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
    MF GO:0017025 TBP-class protein binding IEP Neighborhood
    MF GO:0017076 purine nucleotide binding IEP Neighborhood
    MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
    BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
    CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
    BP GO:0031047 gene silencing by RNA IEP Neighborhood
    BP GO:0031123 RNA 3'-end processing IEP Neighborhood
    BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
    MF GO:0032549 ribonucleoside binding IEP Neighborhood
    MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
    MF GO:0032553 ribonucleotide binding IEP Neighborhood
    MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
    MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
    MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
    MF GO:0036094 small molecule binding IEP Neighborhood
    MF GO:0043167 ion binding IEP Neighborhood
    MF GO:0043168 anion binding IEP Neighborhood
    CC GO:0044422 organelle part IEP Neighborhood
    CC GO:0044428 nuclear part IEP Neighborhood
    CC GO:0044446 intracellular organelle part IEP Neighborhood
    BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
    BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
    MF GO:0097159 organic cyclic compound binding IEP Neighborhood
    MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
    CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
    CC GO:0120114 Sm-like protein family complex IEP Neighborhood
    MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
    MF GO:1901363 heterocyclic compound binding IEP Neighborhood
    InterPro domains Description Start Stop
    IPR012474 Frigida 135 423
    No external refs found!