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  5. Solyc03g118280.1.1

Solyc03g118280.1.1


Description : Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana (sp|q9fit7|pp442_arath : 679.0)


Gene families : OG0009405 (Archaeplastida) Phylogenetic Tree(s): OG0009405_tree ,
OG_05_0009405 (LandPlants) Phylogenetic Tree(s): OG_05_0009405_tree ,
OG_06_0006571 (SeedPlants) Phylogenetic Tree(s): OG_06_0006571_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g118280.1.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Gb_12831 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.05 Archaeplastida
Gb_23333 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.04 Archaeplastida
MA_771194g0010 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004814 arginine-tRNA ligase activity IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006420 arginyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 303 335
IPR002885 Pentatricopeptide_repeat 799 824
IPR002885 Pentatricopeptide_repeat 897 928
IPR002885 Pentatricopeptide_repeat 176 200
IPR002885 Pentatricopeptide_repeat 556 585
IPR002885 Pentatricopeptide_repeat 412 461
IPR002885 Pentatricopeptide_repeat 483 531
IPR002885 Pentatricopeptide_repeat 342 391
IPR002885 Pentatricopeptide_repeat 238 285
IPR002885 Pentatricopeptide_repeat 657 706
IPR002885 Pentatricopeptide_repeat 587 634
IPR002885 Pentatricopeptide_repeat 831 879
IPR002885 Pentatricopeptide_repeat 727 776
No external refs found!