1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g118670.3.1

Solyc03g118670.3.1


Description : component HRD3 of ER-associated protein degradation (ERAD) machinery


Gene families : OG0002477 (Archaeplastida) Phylogenetic Tree(s): OG0002477_tree ,
OG_05_0006435 (LandPlants) Phylogenetic Tree(s): OG_05_0006435_tree ,
OG_06_0008548 (SeedPlants) Phylogenetic Tree(s): OG_06_0008548_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g118670.3.1
Cluster HCCA: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020801.90 No alias No description available 0.01 Archaeplastida
MA_10342253g0020 No alias ERAD-associated E3 ubiquitin-protein ligase component... 0.03 Archaeplastida
Zm00001e001114_P001 No alias component HRD3 of ER-associated protein degradation... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
InterPro domains Description Start Stop
IPR006597 Sel1-like 442 459
IPR006597 Sel1-like 285 317
IPR006597 Sel1-like 248 282
IPR006597 Sel1-like 129 164
IPR006597 Sel1-like 360 387
IPR006597 Sel1-like 544 576
IPR006597 Sel1-like 509 532
IPR006597 Sel1-like 396 426
IPR006597 Sel1-like 321 354
No external refs found!