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  5. Solyc03g118790.3.1

Solyc03g118790.3.1


Description : Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana (sp|q9lsk8|pp240_arath : 767.0)


Gene families : OG0010054 (Archaeplastida) Phylogenetic Tree(s): OG0010054_tree ,
OG_05_0010084 (LandPlants) Phylogenetic Tree(s): OG_05_0010084_tree ,
OG_06_0008212 (SeedPlants) Phylogenetic Tree(s): OG_06_0008212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g118790.3.1
Cluster HCCA: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00213530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g18020... 0.04 Archaeplastida
AT3G18020 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
Gb_06808 No alias Pentatricopeptide repeat-containing protein At3g18020... 0.05 Archaeplastida
LOC_Os07g47720.1 No alias Pentatricopeptide repeat-containing protein At3g18020... 0.04 Archaeplastida
Zm00001e010959_P002 No alias Pentatricopeptide repeat-containing protein At3g18020... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
MF GO:0048365 Rac GTPase binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 464 514
IPR002885 Pentatricopeptide_repeat 642 684
IPR002885 Pentatricopeptide_repeat 214 261
IPR002885 Pentatricopeptide_repeat 536 583
IPR002885 Pentatricopeptide_repeat 355 386
IPR002885 Pentatricopeptide_repeat 82 103
IPR002885 Pentatricopeptide_repeat 294 317
IPR002885 Pentatricopeptide_repeat 184 211
IPR002885 Pentatricopeptide_repeat 610 639
No external refs found!