1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g118800.3.1

Solyc03g118800.3.1


Description : component SF3B4 of splicing factor 3B complex


Gene families : OG0005566 (Archaeplastida) Phylogenetic Tree(s): OG0005566_tree ,
OG_05_0007023 (LandPlants) Phylogenetic Tree(s): OG_05_0007023_tree ,
OG_06_0009824 (SeedPlants) Phylogenetic Tree(s): OG_06_0009824_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g118800.3.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00117370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Cpa|evm.model.tig00001029.19 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Cre06.g254800 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
GSVIVT01018991001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
MA_10046g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_36129g0010 No alias component SF3B4 of splicing factor 3B complex 0.03 Archaeplastida
Mp1g06640.1 No alias component SF3B4 of splicing factor 3B complex 0.04 Archaeplastida
Pp3c12_13810V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Zm00001e004655_P002 No alias component SF3B4 of splicing factor 3B complex 0.08 Archaeplastida
Zm00001e012736_P002 No alias component SF3B4 of splicing factor 3B complex 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 28 97
IPR000504 RRM_dom 114 184
No external refs found!