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  5. Solyc03g119120.3.1

Solyc03g119120.3.1


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 1077.0)


Gene families : OG0007516 (Archaeplastida) Phylogenetic Tree(s): OG0007516_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g119120.3.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT4G02750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.09 Archaeplastida
Gb_05647 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
LOC_Os09g15800.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.09 Archaeplastida
MA_10428421g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_296059g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_74986g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 525 556
IPR002885 Pentatricopeptide_repeat 357 401
IPR002885 Pentatricopeptide_repeat 457 504
IPR032867 DYW_dom 631 754
IPR002885 Pentatricopeptide_repeat 266 293
IPR002885 Pentatricopeptide_repeat 204 230
IPR002885 Pentatricopeptide_repeat 80 109
IPR002885 Pentatricopeptide_repeat 235 259
IPR002885 Pentatricopeptide_repeat 142 169
IPR002885 Pentatricopeptide_repeat 173 196
IPR002885 Pentatricopeptide_repeat 55 79
IPR002885 Pentatricopeptide_repeat 111 139
IPR002885 Pentatricopeptide_repeat 297 327
No external refs found!