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  5. Solyc03g119530.3.1

Solyc03g119530.3.1


Description : transcription factor (AS2/LOB)


Gene families : OG0000724 (Archaeplastida) Phylogenetic Tree(s): OG0000724_tree ,
OG_05_0000483 (LandPlants) Phylogenetic Tree(s): OG_05_0000483_tree ,
OG_06_0000437 (SeedPlants) Phylogenetic Tree(s): OG_06_0000437_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g119530.3.1
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00088960 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
AT1G67100 LBD40 LOB domain-containing protein 40 0.05 Archaeplastida
AT3G02550 LBD41 LOB domain-containing protein 41 0.14 Archaeplastida
GSVIVT01008284001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.15 Archaeplastida
GSVIVT01031035001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.18 Archaeplastida
Gb_36942 No alias transcription factor (AS2/LOB) 0.07 Archaeplastida
Gb_36943 No alias transcription factor (AS2/LOB) 0.07 Archaeplastida
LOC_Os01g32770.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_298679g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e001981_P001 No alias transcription factor (AS2/LOB) 0.08 Archaeplastida
Zm00001e005129_P001 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Zm00001e027415_P001 No alias transcription factor (AS2/LOB) 0.12 Archaeplastida
Zm00001e027417_P001 No alias transcription factor (AS2/LOB) 0.08 Archaeplastida
Zm00001e032150_P001 No alias transcription factor (AS2/LOB) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006787 porphyrin-containing compound catabolic process IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015996 chlorophyll catabolic process IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033015 tetrapyrrole catabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0046149 pigment catabolic process IEP Neighborhood
MF GO:0047746 chlorophyllase activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 4 102
No external refs found!