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  5. Solyc03g119960.3.1

Solyc03g119960.3.1


Description : Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica (sp|q5ks50|nph3_orysj : 240.0)


Gene families : OG0000044 (Archaeplastida) Phylogenetic Tree(s): OG0000044_tree ,
OG_05_0007350 (LandPlants) Phylogenetic Tree(s): OG_05_0007350_tree ,
OG_06_0004637 (SeedPlants) Phylogenetic Tree(s): OG_06_0004637_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g119960.3.1
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00139490 evm_27.TU.AmTr_v1... Root phototropism protein 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT3G15570 No alias Phototropic-responsive NPH3 family protein 0.03 Archaeplastida
GSVIVT01000534001 No alias BTB/POZ domain-containing protein At1g67900... 0.03 Archaeplastida
GSVIVT01035968001 No alias BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01037852001 No alias BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_00474 No alias BTB/POZ domain-containing protein SR1IP1 OS=Arabidopsis... 0.03 Archaeplastida
MA_10074020g0010 No alias BTB/POZ domain-containing protein SR1IP1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc07g052970.3.1 No alias BTB/POZ domain-containing protein At3g22104... 0.03 Archaeplastida
Zm00001e034165_P002 No alias BTB/POZ domain-containing protein NPY1 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e039271_P001 No alias Root phototropism protein 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR027356 NPH3_dom 22 272
No external refs found!