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  5. Solyc03g120280.1.1

Solyc03g120280.1.1


Description : NUP50 nucleoporin of nuclear pore complex


Gene families : OG0005078 (Archaeplastida) Phylogenetic Tree(s): OG0005078_tree ,
OG_05_0005114 (LandPlants) Phylogenetic Tree(s): OG_05_0005114_tree ,
OG_06_0004455 (SeedPlants) Phylogenetic Tree(s): OG_06_0004455_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g120280.1.1
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00196190 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.05 Archaeplastida
AT1G52380 No alias NUP50 (Nucleoporin 50 kDa) protein 0.05 Archaeplastida
Cpa|evm.model.tig00021612.44 No alias No description available 0.01 Archaeplastida
GSVIVT01017123001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.04 Archaeplastida
LOC_Os05g28190.1 No alias NUP50 nucleoporin of nuclear pore complex 0.04 Archaeplastida
MA_167441g0010 No alias NUP50 nucleoporin of nuclear pore complex 0.03 Archaeplastida
Mp5g18610.1 No alias NUP50 nucleoporin of nuclear pore complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0046907 intracellular transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR015007 NUP2/50/61 13 76
IPR000156 Ran_bind_dom 318 432
No external refs found!