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  5. Solyc03g120440.3.1

Solyc03g120440.3.1


Description : cyclin (CYCA)


Gene families : OG0000635 (Archaeplastida) Phylogenetic Tree(s): OG0000635_tree ,
OG_05_0000438 (LandPlants) Phylogenetic Tree(s): OG_05_0000438_tree ,
OG_06_0000371 (SeedPlants) Phylogenetic Tree(s): OG_06_0000371_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g120440.3.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272790 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.07 Archaeplastida
AMTR_s00068p00198800 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.06 Archaeplastida
AT1G44110 CYCA1;1 Cyclin A1;1 0.06 Archaeplastida
AT1G80370 CYCA2;4 Cyclin A2;4 0.05 Archaeplastida
AT5G43080 CYCA3;1 Cyclin A3;1 0.07 Archaeplastida
Cpa|evm.model.tig00000076.67 No alias Cyclin-A2-1 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
GSVIVT01008823001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.11 Archaeplastida
GSVIVT01009399001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.06 Archaeplastida
GSVIVT01035718001 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.06 Archaeplastida
Gb_03779 No alias cyclin (CYCA) 0.07 Archaeplastida
Gb_07594 No alias cyclin (CYCA) 0.11 Archaeplastida
Gb_10619 No alias cyclin (CYCA) 0.1 Archaeplastida
Gb_21011 No alias cyclin (CYCA) 0.05 Archaeplastida
LOC_Os01g13260.1 No alias cyclin (CYCA) 0.06 Archaeplastida
LOC_Os03g41100.1 No alias cyclin (CYCA) 0.09 Archaeplastida
LOC_Os12g31810.1 No alias cyclin (CYCA) 0.05 Archaeplastida
LOC_Os12g39210.1 No alias cyclin (CYCA) 0.06 Archaeplastida
MA_103138g0010 No alias cyclin (CYCA) 0.04 Archaeplastida
MA_28323g0010 No alias cyclin (CYCA) 0.05 Archaeplastida
MA_6619g0010 No alias cyclin (CYCA) 0.05 Archaeplastida
MA_88982g0010 No alias cyclin (CYCA) 0.04 Archaeplastida
Mp2g25500.1 No alias cyclin (CYCA) 0.09 Archaeplastida
Pp3c17_22710V3.1 No alias Cyclin A1;1 0.03 Archaeplastida
Pp3c1_38770V3.1 No alias Cyclin A1;1 0.04 Archaeplastida
Pp3c1_39100V3.1 No alias Cyclin A1;1 0.04 Archaeplastida
Pp3c2_8700V3.1 No alias Cyclin A1;1 0.05 Archaeplastida
Pp3c2_8770V3.1 No alias Cyclin A1;1 0.02 Archaeplastida
Pp3c2_8780V3.1 No alias Cyclin A1;1 0.02 Archaeplastida
Pp3c2_9020V3.1 No alias Cyclin A1;1 0.05 Archaeplastida
Smo442428 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.05 Archaeplastida
Smo97411 No alias Cell cycle.regulation.cyclins.CYCA-type cyclin 0.02 Archaeplastida
Zm00001e003049_P002 No alias cyclin (CYCA) 0.03 Archaeplastida
Zm00001e005138_P001 No alias cyclin (CYCA) 0.04 Archaeplastida
Zm00001e013250_P002 No alias cyclin (CYCA) 0.04 Archaeplastida
Zm00001e017335_P001 No alias cyclin (CYCA) 0.08 Archaeplastida
Zm00001e017993_P001 No alias cyclin (CYCA) 0.02 Archaeplastida
Zm00001e026125_P002 No alias cyclin (CYCA) 0.08 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006671 Cyclin_N 197 324
IPR004367 Cyclin_C-dom 326 448
No external refs found!