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  5. Solyc03g120620.3.1

Solyc03g120620.3.1


Description : transcription factor (HD-ZIP IV)


Gene families : OG0000182 (Archaeplastida) Phylogenetic Tree(s): OG0000182_tree ,
OG_05_0000064 (LandPlants) Phylogenetic Tree(s): OG_05_0000064_tree ,
OG_06_0001940 (SeedPlants) Phylogenetic Tree(s): OG_06_0001940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g120620.3.1
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00094630 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00069p00091460 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT1G34650 HDG10 homeodomain GLABROUS 10 0.03 Archaeplastida
AT1G79840 GL2 HD-ZIP IV family of homeobox-leucine zipper protein with... 0.03 Archaeplastida
AT2G32370 HDG3 homeodomain GLABROUS 3 0.04 Archaeplastida
AT4G21750 ATML1 Homeobox-leucine zipper family protein / lipid-binding... 0.05 Archaeplastida
AT4G26920 No alias START (StAR-related lipid-transfer) lipid-binding domain 0.03 Archaeplastida
AT5G07260 No alias START (StAR-related lipid-transfer) lipid-binding domain 0.03 Archaeplastida
AT5G17320 HDG9 homeodomain GLABROUS 9 0.04 Archaeplastida
AT5G46880 HDG5, HB-7 homeobox-7 0.03 Archaeplastida
GSVIVT01001986001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01001987001 No alias Homeobox-leucine zipper protein ROC7 OS=Oryza sativa... 0.03 Archaeplastida
GSVIVT01035238001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
Gb_05082 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
Gb_29468 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
LOC_Os04g53540.3 No alias transcription factor (HD-ZIP IV) 0.06 Archaeplastida
LOC_Os06g10600.1 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
LOC_Os08g04190.1 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
LOC_Os08g08820.2 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
LOC_Os08g19590.1 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
LOC_Os09g35760.1 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
LOC_Os10g42490.1 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_10318273g0010 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
MA_10374232g0010 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
MA_103885g0010 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_10426189g0030 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_10433688g0010 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
MA_1086446g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_110607g0010 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
MA_122121g0010 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
MA_16767g0010 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_17048g0010 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
MA_305431g0010 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
MA_38472g0010 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_761114g0010 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_8859629g0010 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
MA_93471g0010 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Mp7g09710.1 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Pp3c1_24020V3.1 No alias protodermal factor 2 0.02 Archaeplastida
Zm00001e006870_P004 No alias transcription factor (HD-ZIP IV) 0.05 Archaeplastida
Zm00001e015997_P002 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
Zm00001e021649_P002 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
Zm00001e023786_P003 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Zm00001e034755_P001 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
Zm00001e036212_P002 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Zm00001e039947_P001 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Zm00001e041435_P003 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida
Zm00001e042218_P002 No alias transcription factor (HD-ZIP IV) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008289 lipid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 113 167
IPR002913 START_lipid-bd_dom 286 512
No external refs found!