Solyc03g122070.3.1

Description : subfamily ABCB transporter

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000448 (LandPlants) Phylogenetic Tree(s): OG_05_0000448_tree ,
OG_06_0012780 (SeedPlants) Phylogenetic Tree(s): OG_06_0012780_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g122070.3.1
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00108620	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.01	Archaeplastida
AMTR_s00045p00109940	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AT3G28360	PGP16	P-glycoprotein 16	0.03	Archaeplastida
AT3G62150	PGP21	P-glycoprotein 21	0.02	Archaeplastida
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.02	Archaeplastida
AT4G25960	PGP2	P-glycoprotein 2	0.02	Archaeplastida
GSVIVT01013125001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
Gb_10211	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Gb_10216	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_13908	No alias	ABC transporter B family member 10 OS=Arabidopsis...	0.06	Archaeplastida
Gb_32125	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Gb_36497	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Gb_36503	No alias	serine carboxypeptidase. subfamily ABCB transporter	0.01	Archaeplastida
LOC_Os02g46680.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
LOC_Os08g45030.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_10432922g0010	No alias	subfamily ABCB transporter	0.01	Archaeplastida
MA_126766g0010	No alias	subfamily ABCB transporter	0.01	Archaeplastida
MA_79399g0010	No alias	Putative multidrug resistance protein OS=Oryza sativa...	0.02	Archaeplastida
MA_934204g0010	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Mp2g11920.1	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Smo99885	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Solyc03g093650.3.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Solyc12g098840.3.1	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Zm00001e023274_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	97	368
IPR003439	ABC_transporter-like	438	586

External Links

No external refs found!

Solyc03g122070.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation