Solyc04g005800.3.1

Description : transcription factor (HD-ZIP I/II)

Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g005800.3.1

Target	Alias	Description	ECC score	Gene Family Method
AT4G40060	ATHB16, HB16, ATHB-16	homeobox protein 16	0.06	Archaeplastida
AT5G65310	ATHB5, ATHB-5, HB5	homeobox protein 5	0.05	Archaeplastida
GSVIVT01019655001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.06	Archaeplastida
Gb_20878	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Gb_35116	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Gb_35959	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
LOC_Os02g49700.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
LOC_Os03g08960.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
LOC_Os08g32080.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os08g32085.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os09g29460.1	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
LOC_Os10g26500.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Pp3c1_37070V3.1	No alias	homeobox protein 16	0.02	Archaeplastida
Pp3c25_13450V3.1	No alias	homeobox 1	0.06	Archaeplastida
Pp3c3_37710V3.1	No alias	homeobox 3	0.03	Archaeplastida
Smo18217	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
Zm00001e007381_P001	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Zm00001e010004_P002	No alias	transcription factor (HD-ZIP I/II)	0.07	Archaeplastida
Zm00001e010218_P001	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Zm00001e041342_P001	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	81	134
IPR003106	Leu_zip_homeo	136	177

External Links

No external refs found!

Solyc04g005800.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation