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  5. Solyc04g006990.3.1

Solyc04g006990.3.1


Description : transcription factor (bHLH)


Gene families : OG0000757 (Archaeplastida) Phylogenetic Tree(s): OG0000757_tree ,
OG_05_0000493 (LandPlants) Phylogenetic Tree(s): OG_05_0000493_tree ,
OG_06_0000486 (SeedPlants) Phylogenetic Tree(s): OG_06_0000486_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g006990.3.1
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AT1G68810 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 Archaeplastida
AT2G40200 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT2G41130 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.1 Archaeplastida
AT3G25710 BHLH32, ATAIG1, TMO5 basic helix-loop-helix 32 0.05 Archaeplastida
GSVIVT01011960001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.06 Archaeplastida
GSVIVT01020688001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
GSVIVT01025747001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
GSVIVT01032789001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
LOC_Os08g33590.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Smo412681 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
Zm00001e001119_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e004145_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e006132_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e009812_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e009972_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e016455_P001 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e022445_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e034395_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e038535_P001 No alias transcription factor (bHLH) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 69 116
No external refs found!