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Description : NUP98 nucleoporin of nuclear pore complex
Gene families : OG0001288 (Archaeplastida) Phylogenetic Tree(s): OG0001288_tree ,
OG_05_0003828 (LandPlants) Phylogenetic Tree(s): OG_05_0003828_tree ,
OG_06_0003888 (SeedPlants) Phylogenetic Tree(s): OG_06_0003888_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc04g007280.3.1 | |
| Cluster | HCCA: Cluster_131 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G10390 | No alias | Nucleoporin autopeptidase | 0.05 | Archaeplastida | |
| AT1G80680 | NUP96, PRE, SAR3, MOS3 | SUPPRESSOR OF AUXIN RESISTANCE 3 | 0.03 | Archaeplastida | |
| Cre02.g086887 | No alias | Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana | 0.05 | Archaeplastida | |
| GSVIVT01019716001 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.07 | Archaeplastida | |
| Gb_29033 | No alias | NUP96 scaffold nucleoporin of nuclear pore complex | 0.06 | Archaeplastida | |
| LOC_Os03g07580.1 | No alias | NUP96 scaffold nucleoporin of nuclear pore complex | 0.04 | Archaeplastida | |
| LOC_Os12g06890.1 | No alias | NUP98 nucleoporin of nuclear pore complex | 0.07 | Archaeplastida | |
| MA_62342g0010 | No alias | NUP98 nucleoporin of nuclear pore complex | 0.04 | Archaeplastida | |
| Mp2g01050.1 | No alias | NUP96 scaffold nucleoporin of nuclear pore complex.... | 0.05 | Archaeplastida | |
| Pp3c26_7720V3.1 | No alias | SUPPRESSOR OF AUXIN RESISTANCE 3 | 0.04 | Archaeplastida | |
| Zm00001e020801_P003 | No alias | NUP98 nucleoporin of nuclear pore complex | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005643 | nuclear pore | IEA | Interproscan |
| BP | GO:0006913 | nucleocytoplasmic transport | IEA | Interproscan |
| MF | GO:0017056 | structural constituent of nuclear pore | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Neighborhood |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0004386 | helicase activity | IEP | Neighborhood |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | Neighborhood |
| MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
| MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005667 | transcription factor complex | IEP | Neighborhood |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006401 | RNA catabolic process | IEP | Neighborhood |
| BP | GO:0006402 | mRNA catabolic process | IEP | Neighborhood |
| BP | GO:0006473 | protein acetylation | IEP | Neighborhood |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016573 | histone acetylation | IEP | Neighborhood |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | Neighborhood |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043543 | protein acylation | IEP | Neighborhood |
| BP | GO:0043631 | RNA polyadenylation | IEP | Neighborhood |
| CC | GO:0044798 | nuclear transcription factor complex | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | Neighborhood |
| MF | GO:0070566 | adenylyltransferase activity | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007230 | Peptidase_S59 | 834 | 979 |
| No external refs found! |