1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00024p00224180

AMTR_s00024p00224180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.221

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000006 (SeedPlants) Phylogenetic Tree(s): OG_06_0000006_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00224180
Cluster HCCA: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00267100 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.07 Archaeplastida
AMTR_s00044p00189590 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AT1G74650 ATMYB31, MYB31, ATY13 myb domain protein 31 0.03 Archaeplastida
AT3G46130 ATMYB48-1,... myb domain protein 48 0.03 Archaeplastida
AT3G48920 MYB45, AtMYB45 myb domain protein 45 0.02 Archaeplastida
AT4G17785 MYB39 myb domain protein 39 0.02 Archaeplastida
GSVIVT01000450001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01003662001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01003675001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01011447001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01015102001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.11 Archaeplastida
GSVIVT01016767001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01028981001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Gb_02422 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_19333 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_33678 No alias transcription factor (MYB) 0.06 Archaeplastida
Gb_34086 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_35539 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os01g28280.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os01g45090.1 No alias transcription factor (MYB) 0.06 Archaeplastida
LOC_Os02g36890.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os04g45020.1 No alias transcription factor (MYB) 0.05 Archaeplastida
LOC_Os06g02250.1 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os06g14670.1 No alias transcription factor (MYB) 0.05 Archaeplastida
LOC_Os08g33940.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os08g37970.1 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_101790g0010 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_10428459g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
MA_10432903g0010 No alias transcription factor (MYB) 0.06 Archaeplastida
MA_139238g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_140579g0010 No alias transcription factor (MYB) 0.05 Archaeplastida
MA_2026g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_21440g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_34517g0010 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_37851g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_53373g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_6393g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
Mp5g19050.1 No alias transcription factor (MYB) 0.01 Archaeplastida
Pp3c1_4970V3.1 No alias myb domain protein 106 0.01 Archaeplastida
Smo84195 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Smo98669 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Solyc01g005660.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc01g057910.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc02g079280.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc02g091980.2.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc03g059200.2.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc03g113530.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc05g008250.2.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc06g009710.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc06g071520.1.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc06g075660.4.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc07g052300.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc07g054840.4.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc10g005760.3.1 No alias transcription factor (MYB). transcriptional key... 0.02 Archaeplastida
Solyc10g081490.2.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc11g073120.2.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc12g005890.3.1 No alias Transcription factor MYB101 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc12g008670.2.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e001404_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e001409_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e009831_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e009849_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e011944_P001 No alias transcription factor (MYB) 0.01 Archaeplastida
Zm00001e018186_P001 No alias transcription factor (MYB) 0.01 Archaeplastida
Zm00001e023277_P001 No alias transcription factor (MYB) 0.12 Archaeplastida
Zm00001e024682_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e029816_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e034214_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e035025_P001 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e038356_P001 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e038964_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e041553_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006541 glutamine metabolic process IEP Neighborhood
BP GO:0006542 glutamine biosynthetic process IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 46 93
IPR001005 SANT/Myb 99 143
No external refs found!