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  5. Solyc04g007510.4.1

Solyc04g007510.4.1


Description : DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana (sp|f4im84|dexh5_arath : 1476.0)


Gene families : OG0000373 (Archaeplastida) Phylogenetic Tree(s): OG0000373_tree ,
OG_05_0000862 (LandPlants) Phylogenetic Tree(s): OG_05_0000862_tree ,
OG_06_0000964 (SeedPlants) Phylogenetic Tree(s): OG_06_0000964_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g007510.4.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AT1G48650 No alias DEA(D/H)-box RNA helicase family protein 0.05 Archaeplastida
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.02 Archaeplastida
Cpa|evm.model.tig00000786.1 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00021094.26 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre06.g266416 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 Archaeplastida
GSVIVT01008365001 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01034780001 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_08623 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 Archaeplastida
Gb_40990 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os01g56190.1 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.03 Archaeplastida
MA_10437209g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR011709 DUF1605 879 961
IPR011545 DEAD/DEAH_box_helicase_dom 272 423
IPR007502 Helicase-assoc_dom 724 798
IPR014720 dsRBD_dom 1068 1130
IPR001650 Helicase_C 528 660
No external refs found!