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  5. AMTR_s00024p00224850

AMTR_s00024p00224850 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.223

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000006 (SeedPlants) Phylogenetic Tree(s): OG_06_0000006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00224850
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00146410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AMTR_s00111p00072510 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AT1G16490 MYB58, ATMYB58 myb domain protein 58 0.03 Archaeplastida
AT1G25340 MYB116, AtMYB116 myb domain protein 116 0.03 Archaeplastida
AT1G68320 BW62B, BW62C,... myb domain protein 62 0.02 Archaeplastida
AT5G14340 AtMYB40, MYB40 myb domain protein 40 0.03 Archaeplastida
AT5G16770 MYB9, AtMYB9 myb domain protein 9 0.02 Archaeplastida
AT5G49330 PFG3, ATMYB111, MYB111 myb domain protein 111 0.02 Archaeplastida
AT5G57620 MYB36, AtMYB36 myb domain protein 36 0.02 Archaeplastida
GSVIVT01009424001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01011447001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01015575001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01018234001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Gb_02020 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_06298 No alias transcription factor (MYB) 0.04 Archaeplastida
Gb_19333 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_34086 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_34388 No alias transcription factor (MYB) 0.05 Archaeplastida
Gb_35820 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_39081 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os01g65370.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os02g40530.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os03g20090.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os04g50680.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os07g37210.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os09g23620.1 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_10430220g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_108542g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_121533g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_14452g0010 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_223201g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_246817g0010 No alias transcription factor (MYB) 0.12 Archaeplastida
MA_8147g0020 No alias transcription factor (MYB) 0.03 Archaeplastida
Mp5g14610.1 No alias transcription factor (MYB) 0.01 Archaeplastida
Pp3c1_4970V3.1 No alias myb domain protein 106 0.01 Archaeplastida
Pp3c5_2150V3.1 No alias myb domain protein 109 0.04 Archaeplastida
Smo98669 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Solyc01g079620.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc02g079280.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc02g092930.1.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc05g008250.2.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc06g005310.3.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc06g071520.1.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc07g054840.4.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc08g076700.1.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc09g008250.4.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc10g005240.3.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc12g005640.2.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc12g099130.2.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e004114_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e012497_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e014925_P001 No alias transcription factor (MYB) 0.01 Archaeplastida
Zm00001e018471_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e024037_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e024322_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e033519_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e039235_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e041547_P001 No alias transcription factor (MYB) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 68 112
IPR001005 SANT/Myb 15 62
No external refs found!