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  5. AMTR_s00024p00225650

AMTR_s00024p00225650 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.225

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0003938 (SeedPlants) Phylogenetic Tree(s): OG_06_0003938_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00225650
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00271440 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AMTR_s00030p00146410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
AMTR_s00039p00172240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00139p00079430 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
AMTR_s00145p00098450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AT1G16490 MYB58, ATMYB58 myb domain protein 58 0.02 Archaeplastida
AT1G17950 BW52, ATMYB52, MYB52 myb domain protein 52 0.03 Archaeplastida
AT1G25340 MYB116, AtMYB116 myb domain protein 116 0.02 Archaeplastida
AT1G63910 MYB103, AtMYB103 myb domain protein 103 0.03 Archaeplastida
AT1G68320 BW62B, BW62C,... myb domain protein 62 0.02 Archaeplastida
AT1G79180 ATMYB63, MYB63 myb domain protein 63 0.03 Archaeplastida
AT3G11440 ATMYB65, MYB65 myb domain protein 65 0.04 Archaeplastida
AT3G27785 PGA37, ATMYB118, MYB118 myb domain protein 118 0.02 Archaeplastida
AT3G27810 ATMYB21, MYB21, ATMYB3 myb domain protein 21 0.02 Archaeplastida
AT3G53200 AtMYB27, MYB27 myb domain protein 27 0.02 Archaeplastida
AT4G13480 AtMYB79, MYB79 myb domain protein 79 0.04 Archaeplastida
AT4G22680 AtMYB85, MYB85 myb domain protein 85 0.03 Archaeplastida
AT4G28110 MYB41, AtMYB41 myb domain protein 41 0.03 Archaeplastida
AT4G33450 ATMYB69, MYB69 myb domain protein 69 0.03 Archaeplastida
AT5G14750 MYB66, ATMYB66, WER, WER1 myb domain protein 66 0.02 Archaeplastida
AT5G40350 MYB24, AtMYB24 myb domain protein 24 0.02 Archaeplastida
AT5G54230 MYB49, AtMYB49 myb domain protein 49 0.03 Archaeplastida
Cre02.g108350 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01004851001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01007740001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01008484001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01009032001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01009280001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01009566001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01010086001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01013126001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01015264001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01015575001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01016800001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
GSVIVT01019410001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01023531001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01024353001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01028235001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01033418001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01035177001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01035332001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Gb_03400 No alias transcription factor (MYB) 0.04 Archaeplastida
Gb_03994 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_29933 No alias transcription factor (MYB) 0.05 Archaeplastida
Gb_34086 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os01g07450.1 No alias transcription factor (MYB) 0.06 Archaeplastida
LOC_Os01g36460.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os01g50720.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os02g02370.1 No alias transcription factor (MYB) 0.05 Archaeplastida
LOC_Os02g09480.1 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os03g04900.1 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os03g18480.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os03g25550.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os04g45060.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os05g35500.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os08g33660.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os08g37970.1 No alias transcription factor (MYB) 0.08 Archaeplastida
LOC_Os09g01960.1 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os12g07640.1 No alias transcription factor (MYB) 0.06 Archaeplastida
MA_10433651g0010 No alias transcription factor (MYB) 0.05 Archaeplastida
MA_10434028g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_117992g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_121533g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_140579g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_14204g0010 No alias transcription factor (MYB) 0.05 Archaeplastida
MA_15502g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_179894g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_22140g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_230300g0010 No alias transcription factor (MYB) 0.05 Archaeplastida
MA_30864g0010 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_316475g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_446064g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_79447g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_8626g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_95339g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
Mp5g22280.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Pp3c12_10360V3.1 No alias myb domain protein 105 0.03 Archaeplastida
Pp3c16_9970V3.1 No alias myb domain protein 106 0.02 Archaeplastida
Pp3c7_23490V3.1 No alias myb domain protein 106 0.04 Archaeplastida
Solyc01g087130.4.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc01g094360.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc01g102340.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc02g082040.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc02g089190.2.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc02g093740.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc03g025870.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc03g112890.1.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc04g014470.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc04g078420.1.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Solyc05g053330.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc06g009710.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc06g053610.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc07g006750.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc07g054840.4.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc08g076710.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc09g090790.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc10g008700.3.1 No alias No annotation 0.02 Archaeplastida
Solyc10g019260.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e005044_P002 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e007904_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e008489_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e010995_P001 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e012497_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e013452_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e014925_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e018471_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e020004_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e020044_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e024322_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e028135_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e029816_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e030775_P002 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e032298_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e040265_P001 No alias transcription factor (MYB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 7 54
IPR001005 SANT/Myb 60 105
No external refs found!