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  5. AMTR_s00024p00226010

AMTR_s00024p00226010 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.226

Description : Vesicle trafficking.autophagosome formation.ATG8/ATG12 conjugation system.ATG12-ATG5 ATG8-PE-ligase E3 dimer.ATG12 ubiquitin-fold component


Gene families : OG0008257 (Archaeplastida) Phylogenetic Tree(s): OG0008257_tree ,
OG_05_0009637 (LandPlants) Phylogenetic Tree(s): OG_05_0009637_tree ,
OG_06_0011313 (SeedPlants) Phylogenetic Tree(s): OG_06_0011313_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00226010
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
Cre12.g557000 No alias Vesicle trafficking.autophagosome formation.ATG8/ATG12... 0.03 Archaeplastida
Solyc12g049310.2.1 No alias ubiquitin-fold component ATG12 of autophagosome... 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004150 dihydroneopterin aldolase activity IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006760 folic acid-containing compound metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007242 Atg12 11 94
No external refs found!