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  5. Solyc04g008230.3.1

Solyc04g008230.3.1


Description : Polygalacturonase At1g48100 OS=Arabidopsis thaliana (sp|q949z1|pglr4_arath : 642.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 203.9)


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000636 (LandPlants) Phylogenetic Tree(s): OG_05_0000636_tree ,
OG_06_0002274 (SeedPlants) Phylogenetic Tree(s): OG_06_0002274_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008230.3.1
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00197210 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AMTR_s00096p00105250 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.05 Archaeplastida
AMTR_s00103p00121270 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.03 Archaeplastida
AT1G05660 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT1G10640 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G43880 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G43890 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT3G26610 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT4G01890 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT5G14650 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G17200 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01028189001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_05788 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.06 Archaeplastida
Gb_12008 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 Archaeplastida
Gb_13004 No alias polygalacturonase (PGX1) 0.03 Archaeplastida
Gb_27331 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
LOC_Os01g43490.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
LOC_Os03g59330.1 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
LOC_Os05g20020.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_285723g0010 No alias Polygalacturonase OS=Persea americana... 0.04 Archaeplastida
Pp3c23_3890V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo78038 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
Solyc04g015530.3.1 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
Solyc12g019180.2.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Zm00001e011814_P002 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
Zm00001e027946_P001 No alias polygalacturonase (PGX1) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 127 441
No external refs found!