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  5. Solyc04g008500.4.1

Solyc04g008500.4.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000200 (Archaeplastida) Phylogenetic Tree(s): OG0000200_tree ,
OG_05_0000106 (LandPlants) Phylogenetic Tree(s): OG_05_0000106_tree ,
OG_06_0000058 (SeedPlants) Phylogenetic Tree(s): OG_06_0000058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008500.4.1
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
AT1G03840 MGP C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
AT1G14580 No alias C2H2-like zinc finger protein 0.04 Archaeplastida
AT3G45260 No alias C2H2-like zinc finger protein 0.03 Archaeplastida
AT3G50700 IDD2, AtIDD2 indeterminate(ID)-domain 2 0.03 Archaeplastida
AT4G02670 AtIDD12, IDD12 indeterminate(ID)-domain 12 0.03 Archaeplastida
AT5G44160 NUC C2H2-like zinc finger protein 0.04 Archaeplastida
GSVIVT01010284001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01010961001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01025166001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01025658001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
Gb_24099 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os01g39110.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os10g28330.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
MA_10436688g0010 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Pp3c5_20980V3.1 No alias C2H2-like zinc finger protein 0.02 Archaeplastida
Zm00001e004751_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!