1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g008570.4.1

Solyc04g008570.4.1


Description : Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana (sp|q66gp4|pp379_arath : 572.0)


Gene families : OG0008241 (Archaeplastida) Phylogenetic Tree(s): OG0008241_tree ,
OG_05_0006918 (LandPlants) Phylogenetic Tree(s): OG_05_0006918_tree ,
OG_06_0004713 (SeedPlants) Phylogenetic Tree(s): OG_06_0004713_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008570.4.1
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AT5G13770 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.1 Archaeplastida
GSVIVT01010259001 No alias Pentatricopeptide repeat-containing protein At5g13770,... 0.05 Archaeplastida
GSVIVT01032336001 No alias Pentatricopeptide repeat-containing protein At5g13770,... 0.04 Archaeplastida
LOC_Os04g49350.1 No alias Pentatricopeptide repeat-containing protein At5g13770,... 0.12 Archaeplastida
MA_7931826g0010 No alias Pentatricopeptide repeat-containing protein At5g13770,... 0.07 Archaeplastida
Zm00001e007144_P001 No alias Pentatricopeptide repeat-containing protein At5g13770,... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006817 phosphate ion transport IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 319 341
IPR002885 Pentatricopeptide_repeat 348 373
IPR002885 Pentatricopeptide_repeat 273 301
IPR002885 Pentatricopeptide_repeat 595 620
IPR002885 Pentatricopeptide_repeat 534 566
IPR002885 Pentatricopeptide_repeat 472 532
IPR002885 Pentatricopeptide_repeat 403 460
No external refs found!