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  5. Solyc04g009000.1.1

Solyc04g009000.1.1


Description : RNA editing factor (SLO2)


Gene families : OG0011027 (Archaeplastida) Phylogenetic Tree(s): OG0011027_tree ,
OG_05_0010980 (LandPlants) Phylogenetic Tree(s): OG_05_0010980_tree ,
OG_06_0010967 (SeedPlants) Phylogenetic Tree(s): OG_06_0010967_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g009000.1.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT2G13600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
GSVIVT01000936001 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 Archaeplastida
Gb_00409 No alias RNA editing factor (SLO2) 0.03 Archaeplastida
Gb_02603 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 218 266
IPR002885 Pentatricopeptide_repeat 459 505
IPR002885 Pentatricopeptide_repeat 351 400
IPR002885 Pentatricopeptide_repeat 121 149
IPR002885 Pentatricopeptide_repeat 433 458
IPR002885 Pentatricopeptide_repeat 293 320
IPR002885 Pentatricopeptide_repeat 61 87
IPR002885 Pentatricopeptide_repeat 533 557
IPR002885 Pentatricopeptide_repeat 89 115
No external refs found!