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  5. Solyc04g009020.4.1

Solyc04g009020.4.1


Description : plastidial RNA transcript stability factor


Gene families : OG0004221 (Archaeplastida) Phylogenetic Tree(s): OG0004221_tree ,
OG_05_0008451 (LandPlants) Phylogenetic Tree(s): OG_05_0008451_tree ,
OG_06_0007828 (SeedPlants) Phylogenetic Tree(s): OG_06_0007828_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g009020.4.1
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AT3G17040 HCF107 high chlorophyll fluorescent 107 0.07 Archaeplastida
Cre09.g416200 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Gb_26531 No alias plastidial RNA transcript stability factor 0.03 Archaeplastida
LOC_Os03g19560.1 No alias plastidial RNA transcript stability factor 0.03 Archaeplastida
MA_89548g0010 No alias Protein high chlorophyll fluorescent 107 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c1_20310V3.1 No alias high chlorophyll fluorescent 107 0.06 Archaeplastida
Smo61985 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Zm00001e001457_P001 No alias plastidial RNA transcript stability factor 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004133 glycogen debranching enzyme activity IEP Neighborhood
MF GO:0004134 4-alpha-glucanotransferase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!