Solyc04g009220.2.1


Description : Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana (sp|p0c8q6|pp368_arath : 674.0)


Gene families : OG0010505 (Archaeplastida) Phylogenetic Tree(s): OG0010505_tree ,
OG_05_0010499 (LandPlants) Phylogenetic Tree(s): OG_05_0010499_tree ,
OG_06_0009831 (SeedPlants) Phylogenetic Tree(s): OG_06_0009831_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g009220.2.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT5G08310 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.12 Archaeplastida
GSVIVT01026178001 No alias Putative pentatricopeptide repeat-containing protein... 0.11 Archaeplastida
LOC_Os05g24930.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
MA_10426691g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e000884_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 469 516
IPR002885 Pentatricopeptide_repeat 282 326
IPR002885 Pentatricopeptide_repeat 147 186
IPR002885 Pentatricopeptide_repeat 542 586
IPR002885 Pentatricopeptide_repeat 607 656
IPR002885 Pentatricopeptide_repeat 677 726
IPR002885 Pentatricopeptide_repeat 213 242
IPR002885 Pentatricopeptide_repeat 386 406
IPR002885 Pentatricopeptide_repeat 249 276
IPR002885 Pentatricopeptide_repeat 751 774
IPR002885 Pentatricopeptide_repeat 431 460
No external refs found!